Journal: Frontiers in Microbiology

Article Title: Differential Distributions of Synechococcus Subgroups Across the California Current System

doi: 10.3389/fmicb.2011.00059

Figure Lengend Snippet: Multi-dimensional scaling plots of environmental variables and narB subgroup abundances from CN207 samples . Spearman similarity matrices were used to construct the MDS plots. All data used is from the DCM and above, and were log ( x + 1) transformed before any analysis. narB subgroup abundance variables are italicized while environmental variables are not. (A) 3D plot of environmental and abundance variables, with the third dimension being represented by color (Kruskal's stress = 0.08). (B) 2D MDS bubble plot of narB subgroup abundances (dots) and their respective correlation coefficients in relation to nitrate (bubbles; Kruskal's stress = 0.04). A Spearman similarity matrix that contained only subgroup abundance data [same as in 9 (A) ] was used to construct the plot. Bubbles are scaled so that their width equates to the Spearman correlation coefficient value between the abundance of the respective subgroup and nitrate. All correlation coefficient values were significant ( p < 0.05) except for subgroups A_C1 and F_C1 (small bubbles). Colored bubbles represent positive coefficients and grayscale bubbles are for negative values. The width of the largest bubble (C_C1) equates to 0.68, while the smallest bubbles equate to ∼0.18.

Article Snippet: Spearman correlation matrices and MDS plots were generated in XLSTAT (Addinsoft; New York, NY, USA).

Techniques: Construct, Transformation Assay

Journal: Antibiotics

Article Title: Molecular Characterization of Multidrug-Resistant and Extended-Spectrum β-Lactamases-Producing Salmonella enterica Serovars Enteritidis and Typhimurium Isolated from Raw Meat in Retail Markets

doi: 10.3390/antibiotics13070586

Figure Lengend Snippet: The scatter plot correlation matrix with a histogram showing the multiple antibiotic resistance index of Salmonella enterica serovars ( A ) S. Enteritidis, ( B ) S. Typhimurium, and ( C ) the multidrug resistance (MDR) profiles of the isolates in different livestock (cattle, goat, and chicken) meat samples investigated in the present study.

Article Snippet: Additionally, a scatter plot correlation matrix with histograms was generated to display MARI value of Salmonella enterica serovars, utilizing Origin-Pro 2024 ( www.originlab.com , accessed on 15 March 2024).

Techniques:

Journal: Research

Article Title: In-Depth Metaproteomics Analysis of Oral Microbiome for Lung Cancer

doi: 10.34133/2022/9781578

Figure Lengend Snippet: The performance of the sample pretreatment method. (a) The numbers of identified bacterial peptides and other peptides (top), the numbers of identified species and species-level peptides (middle), and the bacterial proportions of peptide intensity and number over the host (bottom). ∗∗ p < 0.01, ∗∗∗ p < 0.001, two-sided unpaired t -test. (b) Pearson correlation coefficient of identified bacterial peptides between the methods with or without pretreatment. (c) Venn diagram of the identified bacteria taxa by the methods with or without pretreatment ( n = 3, three technical replicates, each circle represents a replicate).

Article Snippet: RStudio was used for Pearson correlation coefficient plot, volcano plots, Circos plots, Venn diagrams, and Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment plot generation.

Techniques: Bacteria